Bgee: Gene Expression Evolution

Gene: HMGN1 - ENSG00000205581 - Homo sapiens (human)

Retrieve expression data by: Developmental stage browsing - Anatomy browsing - Table view - Comparing expression pattern between homologous genes - Miscellaneous: General information - Gene ontology - Cross-references

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Data parameters
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Gene namesHMGN1

Synonyms:

  • FLJ27265
  • FLJ31471
  • HMG14
  • MGC104230
  • MGC117425
Descriptionhigh mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984]
OrganismHomo sapiens (human) - Taxonomic identifier: 9606 [NCBI]
Gene typeprotein_coding
Expression in structuresEV:0100381: adipose tissue, EV:0100189: amygdala, EV:0100008: anatomical site, EV:0100000: Anatomical System, EV:0100027: aorta, EV:0100026: artery, EV:0100140: bone, EV:0100046: bone marrow, EV:0100164: brain, EV:0100293: cerebellum, EV:0100347: choroid, EV:0100363: cochlea, EHDAA:38: embryo, EV:0100167: frontal lobe, EV:0100018: heart, EV:0100180: hippocampus, EV:0100225: hypothalamus, EV:0100075: ileum, EV:0100130: islet of Langerhans, EV:0100096: kidney, EV:0100089: liver, EV:0100042: lung, EV:0100125: mammary gland, EHDAA:8031: maxilla, EV:0100275: medulla oblongata, EV:0100066: nasopharynx, EV:0100092: pancreas, EV:0100131: pineal gland, EV:0100132: pituitary gland, EV:0100119: placenta, EV:0100104: prostate, EV:0100081: rectum, EV:0100388: renal proximal convoluted tubule, EV:0100348: retina, EV:0100377: skeletal muscle, EV:0100152: skin, EV:0100072: small intestine, EV:0100316: spinal cord, EV:0100373: spinal ganglion, EV:0100055: spleen, EV:0100070: stomach, EV:0100374: sympathetic chain, EV:0100169: temporal lobe, EV:0100102: testis, EV:0100195: thalamus, EV:0100138: thymus, EV:0100058: tongue, OGEO:000001: unknown, EV:0100113: uterus, EV:0100336: visual apparatus ... (all 50) display all
Retrieve also the structures by anatomy browsing or by table view
Expression at developmental stagesHsapDO:0000001: Human developmental stage, HsapDO:0000025: CarnegieStage18, HsapDO:0000029: CarnegieStage22, HsapDO:0000037: fetal stage, HsapDO:0000197: third LMP month, HsapDO:0000200: sixth LMP month, HsapDO:0000058: 21st week post-fertilization, HsapDO:0000175: 2 months, HsapDO:0000110: 16 years, HsapDO:0000087: adult stage, HsapDO:0000116: 22 years, HsapDO:0000118: 24 years, HsapDO:0000120: 26 years, HsapDO:0000121: 27 years, HsapDO:0000122: 28 years, HsapDO:0000123: 29 years, HsapDO:0000130: 36 years, HsapDO:0000136: 42 years, HsapDO:0000142: 48 years, HsapDO:0000149: 55 years, HsapDO:0000151: 57 years, HsapDO:0000157: 63 years, HsapDO:0000158: 64 years, HsapDO:0000160: 66 years, HsapDO:0000161: 67 years, HsapDO:0000162: 68 years, HsapDO:0000167: 73 years, HsapDO:0000095: 80 and over year-old adult, HsapDO:0000044: unknown ... (all 29) display all
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Expression dataRetrieve expression pattern by anatomy browsing, or developmental stage browsing, or table view.
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Hide | TopCompare expression pattern to homologous genes

Gene family identifierDescriptionPrediction methodGene count
ENSGTV:1227082high mobility group nucleosomal binding domain 2 [Source:Jamboree;Acc:XB-GENE-1015271]Orthologs Vertebrates [?]12

Hide | TopExpression data - Developmental ontology browsing [?]

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hide OGEO:000003: human anatomical entity - Expression score: 371 ESTs (118 libraries) - 10 probesets (10 chips) - 16 RNA-Seq libraries (1 experiment)

enlarge EHDAA:1: human - Expression score: 6 ESTs (4 libraries)

enlarge EV:0100000: Anatomical System - Expression score: 357 ESTs (110 libraries) - 10 probesets (10 chips) - 16 RNA-Seq libraries (1 experiment)

OGEO:000001: unknown - Expression score: 8 ESTs (4 libraries)

Hide | TopExpression data - Table view [?]

Data parameters
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Organs / Stages HsapDO:0000001: Human developmental stage HsapDO:0000025: CarnegieStage18 HsapDO:0000029: CarnegieStage22 HsapDO:0000037: fetal stage HsapDO:0000197: third LMP month HsapDO:0000200: sixth LMP month HsapDO:0000058: 21st week post-fertilization HsapDO:0000175: 2 months HsapDO:0000110: 16 years HsapDO:0000087: adult stage HsapDO:0000116: 22 years HsapDO:0000118: 24 years HsapDO:0000120: 26 years HsapDO:0000121: 27 years HsapDO:0000122: 28 years HsapDO:0000123: 29 years HsapDO:0000130: 36 years HsapDO:0000136: 42 years HsapDO:0000142: 48 years HsapDO:0000149: 55 years HsapDO:0000151: 57 years HsapDO:0000157: 63 years HsapDO:0000158: 64 years HsapDO:0000160: 66 years HsapDO:0000161: 67 years HsapDO:0000162: 68 years HsapDO:0000167: 73 years HsapDO:0000095: 80 and over year-old adult HsapDO:0000044: unknown Organs / Stages
EV:0100381: adipose tissue - - - - - - - - - 1 EST (1 library) - - - - - - - - - - - - - - - - - - - EV:0100381: adipose tissue
EV:0100189: amygdala - - - - - - - - - - - - - - - - - - - - - - - - - - - - 6 ESTs (3 libraries) EV:0100189: amygdala
EV:0100008: anatomical site - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2 ESTs (1 library) EV:0100008: anatomical site
EV:0100000: Anatomical System 1 EST (1 library) - - 5 ESTs (2 libraries) - - 4 ESTs (2 libraries) - - 4 ESTs (2 libraries) - - - - 1 EST (1 library) - - - - - - - - - - - - - - EV:0100000: Anatomical System
EV:0100027: aorta - - - - - - - - - - - - - - - - - - - - - - 3 ESTs (1 library) - - - - - - EV:0100027: aorta
EV:0100026: artery - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 EST (1 library) EV:0100026: artery
EV:0100140: bone - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 EST (1 library) EV:0100140: bone
EV:0100046: bone marrow - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 EST (1 library) EV:0100046: bone marrow
EV:0100164: brain - - - 37 ESTs (8 libraries) - - - 4 ESTs (1 library) - - - - - - - - - - - - - - - - - - - - 11 ESTs (2 libraries) - 2 probesets (2 chips) EV:0100164: brain
EV:0100293: cerebellum - - - - - - - - - - - - - - - - - - - - - - - - - 1 RNA-Seq library (1 experiment) - 1 RNA-Seq library (1 experiment) 19 ESTs (3 libraries) EV:0100293: cerebellum
EV:0100347: choroid - - - - - - - - - 2 ESTs (1 library) - - - - - - - - - - - - - - - - - - - EV:0100347: choroid
EV:0100363: cochlea - - - 2 ESTs (1 library) - - - - - - - - - - - - - - - - - - - - - - - - - EV:0100363: cochlea
EHDAA:38: embryo - - 2 ESTs (1 library) - 3 ESTs (2 libraries) - - - - - - - - - - - - - - - - - - - - - - - - EHDAA:38: embryo
EV:0100167: frontal lobe - - - - - 4 ESTs (1 library) - - - - - - - - - - - 1 RNA-Seq library (1 experiment) 1 RNA-Seq library (1 experiment) - - 1 RNA-Seq library (1 experiment) - - - - - - 1 EST (1 library) EV:0100167: frontal lobe
EV:0100018: heart - - - 14 ESTs (1 library) 6 ESTs (1 library) - - - - - - - - - - 1 RNA-Seq library (1 experiment) - - - - 1 RNA-Seq library (1 experiment) - - - - - 1 RNA-Seq library (1 experiment) - 1 EST (1 library) EV:0100018: heart
EV:0100180: hippocampus - - - - - - - - - - - - - 1 EST (1 library) - - - - - - - - - - - - - - 25 ESTs (3 libraries) EV:0100180: hippocampus
EV:0100225: hypothalamus - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 EST (1 library) EV:0100225: hypothalamus
EV:0100075: ileum - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 EST (1 library) EV:0100075: ileum
EV:0100130: islet of Langerhans - - - - - - - - - - - - - - - - - - - - - - - - - - - - 13 ESTs (2 libraries) EV:0100130: islet of Langerhans
EV:0100096: kidney - - - - - - - - - - - - 1 RNA-Seq library (1 experiment) - - - - - - - - - - 1 RNA-Seq library (1 experiment) 1 RNA-Seq library (1 experiment) - - - 6 ESTs (3 libraries) EV:0100096: kidney
EV:0100089: liver - - - 6 ESTs (3 libraries) - - - - - - 1 RNA-Seq library (1 experiment) - - - - - - - - - - - 1 RNA-Seq library (1 experiment) - - - - - - EV:0100089: liver
EV:0100042: lung 12 ESTs (1 library) - - 7 ESTs (1 library) - - - - - 5 ESTs (2 libraries) - - - - - - - - - - - - - - - - - - 5 ESTs (2 libraries) EV:0100042: lung
EV:0100125: mammary gland - - - - - - - - - 1 EST (1 library) - - - - - - - - - - - - - - - - - - - EV:0100125: mammary gland
EHDAA:8031: maxilla - 1 EST (1 library) - - - - - - - - - - - - - - - - - - - - - - - - - - - EHDAA:8031: maxilla
EV:0100275: medulla oblongata - - - - - - - - - - - - - 1 EST (1 library) - - - - - - - - - - - - - - - EV:0100275: medulla oblongata
EV:0100066: nasopharynx - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 EST (1 library) EV:0100066: nasopharynx
EV:0100092: pancreas - - - 3 ESTs (1 library) - - - - - - - - - - - - - - - - - - - - - - - - 2 probesets (2 chips) EV:0100092: pancreas
EV:0100131: pineal gland - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4 ESTs (1 library) EV:0100131: pineal gland
EV:0100132: pituitary gland - - - - - - - - - 1 EST (1 library) - - - - - - - - - - - - - - - - - - 3 ESTs (1 library) EV:0100132: pituitary gland
EV:0100119: placenta - - - - - - - - - 39 ESTs (8 libraries) - - - - - - - - - - - - - - - - - - 3 ESTs (1 library) EV:0100119: placenta
EV:0100104: prostate - - - - - - - - - 6 ESTs (1 library) - - - - - - - - - - - - - - - - - - 2 ESTs (2 libraries) - 2 probesets (2 chips) EV:0100104: prostate
EV:0100081: rectum - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 EST (1 library) EV:0100081: rectum
EV:0100388: renal proximal convoluted tubule - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 EST (1 library) EV:0100388: renal proximal convoluted tubule
EV:0100348: retina - - - 1 EST (1 library) - - - - - 6 ESTs (4 libraries) - - - - - - - - - 6 ESTs (2 libraries) - - - - - - - 2 ESTs (1 library) - EV:0100348: retina
EV:0100377: skeletal muscle - - - - - - - - - 5 ESTs (1 library) - - - - - - - - - - - - - - - - - - 2 ESTs (2 libraries) EV:0100377: skeletal muscle
EV:0100152: skin - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4 ESTs (2 libraries) EV:0100152: skin
EV:0100072: small intestine - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5 ESTs (2 libraries) EV:0100072: small intestine
EV:0100316: spinal cord - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2 probesets (2 chips) EV:0100316: spinal cord
EV:0100373: spinal ganglion - - - - - - - - - - - - - - - - 3 ESTs (1 library) - - - - - - - - - - - - EV:0100373: spinal ganglion
EV:0100055: spleen - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3 ESTs (1 library) EV:0100055: spleen
EV:0100070: stomach - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 EST (1 library) EV:0100070: stomach
EV:0100374: sympathetic chain - - - - - - - - 2 ESTs (1 library) - - - - - - - - - - - - - - - - - - - - EV:0100374: sympathetic chain
EV:0100169: temporal lobe - - - - - - - - - - - 1 RNA-Seq library (1 experiment) - - - - - - - - - - - - - - - - - EV:0100169: temporal lobe
EV:0100102: testis - - - - - - - - - 2 ESTs (2 libraries) - - - 1 RNA-Seq library (1 experiment) - - - - - - - - - - - - - 1 RNA-Seq library (1 experiment) 13 ESTs (3 libraries) EV:0100102: testis
EV:0100195: thalamus - - - - - - - - - - - - - - - - - - - - - - - - - - - - 10 ESTs (2 libraries) EV:0100195: thalamus
EV:0100138: thymus - - - - - - - - - - - - - - - - - - - - - - - - - - - - 7 ESTs (1 library) - 2 probesets (2 chips) EV:0100138: thymus
EV:0100058: tongue - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 EST (1 library) EV:0100058: tongue
OGEO:000001: unknown - - - - - - - - - 2 ESTs (1 library) - - - - - - - - - - - - - - - - - - 6 ESTs (3 libraries) OGEO:000001: unknown
EV:0100113: uterus - - - - - - - - - 2 ESTs (1 library) - - - - - - - - - - - - - - - - - - - EV:0100113: uterus
EV:0100336: visual apparatus - - - 2 ESTs (1 library) - - - - - - - - - - - - - - - - - - - - - - - - 1 EST (1 library) EV:0100336: visual apparatus
Organs / Stages HsapDO:0000001: Human developmental stage HsapDO:0000025: CarnegieStage18 HsapDO:0000029: CarnegieStage22 HsapDO:0000037: fetal stage HsapDO:0000197: third LMP month HsapDO:0000200: sixth LMP month HsapDO:0000058: 21st week post-fertilization HsapDO:0000175: 2 months HsapDO:0000110: 16 years HsapDO:0000087: adult stage HsapDO:0000116: 22 years HsapDO:0000118: 24 years HsapDO:0000120: 26 years HsapDO:0000121: 27 years HsapDO:0000122: 28 years HsapDO:0000123: 29 years HsapDO:0000130: 36 years HsapDO:0000136: 42 years HsapDO:0000142: 48 years HsapDO:0000149: 55 years HsapDO:0000151: 57 years HsapDO:0000157: 63 years HsapDO:0000158: 64 years HsapDO:0000160: 66 years HsapDO:0000161: 67 years HsapDO:0000162: 68 years HsapDO:0000167: 73 years HsapDO:0000095: 80 and over year-old adult HsapDO:0000044: unknown Organs / Stages

Hide | TopGene ontology

DomainGO terms
biological process
  • GO:0010224: response to UV-B [GO]
  • GO:0050678: regulation of epithelial cell proliferation [GO]
  • GO:0006325: chromatin organization [GO]
  • GO:0048597: post-embryonic camera-type eye morphogenesis [GO]
  • GO:0000720: pyrimidine dimer repair by nucleotide-excision repair [GO]
  • GO:0006283: transcription-coupled nucleotide-excision repair [GO]
  • GO:0040034: regulation of development, heterochronic [GO]
  • GO:0032786: positive regulation of DNA-dependent transcription, elongation [GO]
  • GO:0010225: response to UV-C [GO]
cellular component
  • GO:0000785: chromatin [GO]
  • GO:0005737: cytoplasm [GO]
  • GO:0005634: nucleus [GO]
molecular function
  • GO:0031492: nucleosomal DNA binding [GO]
  • GO:0003682: chromatin binding [GO]
  • GO:0003677: DNA binding [GO]

Hide | TopCross-references

Ensembl
EMBL
UniprotKB/TrEMBL
UniprotKB/Swiss-prot
neXtProt